Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs638135 chr11:86185688 A/G 0.000108 287 10.7 22.1 26.37 KM Plot
KIRP rs6416649 chr16:8713325 T/G 5.9E-5 287 5.72 32.93 25.57 KM Plot
KIRP rs6416650 chr16:8713376 G/A 5.9E-5 287 5.72 32.93 25.57 KM Plot
KIRP rs6416651 chr16:8713522 G/A 5.55E-5 288 5.72 31.57 25.57 KM Plot
KIRP rs6416652 chr16:8713821 A/G 5.55E-5 288 5.72 31.57 25.57 KM Plot
KIRP rs6426936 chr1:165684707 C/T 5.81E-7 289 24.8 42.92 10.6 KM Plot
KIRP rs6431654 chr2:234161769 C/T 0.000109 289 24.3 26.63 23.23 KM Plot
KIRP rs6442564 chr3:16018250 C/T 1.7E-6 283 23.32 29.6 23.6 KM Plot
KIRP rs6442565 chr3:16018470 A/G 1.7E-6 283 23.32 29.6 23.6 KM Plot
KIRP rs6442566 chr3:16021899 G/T 2.0E-6 283 23.23 29.6 22.57 KM Plot
KIRP rs6442568 chr3:16051473 T/G 3.37E-6 283 20.6 29.2 25.58 KM Plot
KIRP rs6455536 chr6:168976450 C/T 0.000135 282 28.03 26.6 18.2 KM Plot
KIRP rs6457967 chr6:37002012 A/G 0.000131 289 26.1 18.87 11.2 KM Plot
KIRP rs6458950 chr6:53508614 T/C 8.3E-5 288 8.6 26.37 25.58 KM Plot
KIRP rs6467243 chr7:129001508 A/G 6.0E-6 276 26.4 27.15 17.13 KM Plot